2023:
(1-63)
1. Yuan J and Ofengeim D. A guide to cell death pathways. Nat Rev Mol Cell Biol 2023.
2. Xiang J, Tao Y, Xia Y, Luo S, Zhao Q, Li B, Zhang X, Sun Y, Xia W, Zhang M, Kang SS, Ahn EH, Liu X, Xie F, Guan Y, Yang JJ, Bu L, Wu S, Wang X, Cao X, Liu C, Zhang Z, Li D, Ye K. Development of an alpha-synuclein positron emission tomography tracer for imaging synucleinopathies. Cell 186: 3350-3367 e3319, 2023.
3. Bai Y, Zhang S, Dong H, Liu Y, Liu C, Zhang X. Advanced Techniques for Detecting Protein Misfolding and Aggregation in Cellular Environments. Chem Rev 123: 12254-12311, 2023.
4. Zhang T, Xu D, Trefts E, Lv M, Inuzuka H, Song G, Liu M, Lu J, Liu J, Chu C, Wang M, Wang H, Meng H, Liu H, Zhuang Y, Xie X, Dang F, Guan D, Men Y, Jiang S, Jiang C, Dai X, Liu J, Wang Z, Yan P, Wang J, Tu Z, Babuta M, Erickson E, Hillis AL, Dibble CC, Asara JM, Szabo G, Sicinski P, Miao J, Lee YR, Pan L, Shaw RJ, Yuan J, Wei W. Metabolic orchestration of cell death by AMPK-mediated phosphorylation of RIPK1. Science 380: 1372-1380, 2023.
5. Zhou Z, Ma X, Lin Y, Cheng D, Bavi N, Secker GA, Li JV, Janbandhu V, Sutton DL, Scott HS, Yao M, Harvey RP, Harvey NL, Corry B, Zhang Y, Cox CD. MyoD-family inhibitor proteins act as auxiliary subunits of Piezo channels. Science 381: 799-804, 2023.
6. Shi X, Lingerak R, Herting CJ, Ge Y, Kim S, Toth P, Wang W, Brown BP, Meiler J, Sossey-Alaoui K, Buck M, Himanen J, Hambardzumyan D, Nikolov DB, Smith AW, Wang B. Time-resolved live-cell spectroscopy reveals EphA2 multimeric assembly. Science 382: 1042-1050, 2023.
7. Wang X, Zhang S, Zhang J, Wang Y, Jiang X, Tao Y, Li D, Zhong C, Liu C. Rational design of functional amyloid fibrillar assemblies. Chem Soc Rev 52: 4603-4631, 2023.
8. Wei J, Li M, Ye Z, Hu X, He X, Wang J, Chen G, Zou C, Xu D, Zhang H, Yuan J, Zha Y. Elevated peripheral levels of receptor-interacting protein kinase 1 (RIPK1) and IL-8 as biomarkers of human amyotrophic lateral sclerosis. Signal Transduct Target Ther 8: 451, 2023.
9. Peng HR, Qiu JQ, Zhou QM, Zhang YK, Chen QY, Yin YQ, Su W, Yu S, Wang YT, Cai Y, Gu MN, Zhang HH, Sun QQ, Hu G, Wu YW, Liu J, Chen S, Zhu ZJ, Song XY, Zhou JW. Intestinal epithelial dopamine receptor signaling drives sex-specific disease exacerbation in a mouse model of multiple sclerosis. Immunity 2023.
10. Su T, Lu Y, Fu C, Geng Y, Chen Y. GluN2A mediates ketamine-induced rapid antidepressant-like responses. Nat Neurosci 26: 1751-1761, 2023.
11. Zhao Y, Zheng Q, Hong Y, Gao Y, Hu J, Lang M, Zhang H, Zhou Y, Luo H, Zhang X, Sun H, Yan XX, Huang TY, Wang YJ, Xu H, Liu C, Wang X. β2-Microglobulin coaggregates with Aβ and contributes to amyloid pathology and cognitive deficits in Alzheimer’s disease model mice Nat Neurosci 26: 1170-1184, 2023.
12. Zhang T, Xu D, Liu J, Wang M, Duan LJ, Liu M, Meng H, Zhuang Y, Wang H, Wang Y, Lv M, Zhang Z, Hu J, Shi L, Guo R, Xie X, Liu H, Erickson E, Wang Y, Yu W, Dang F, Guan D, Jiang C, Dai X, Inuzuka H, Yan P, Wang J, Babuta M, Lian G, Tu Z, Miao J, Szabo G, Fong GH, Karnoub AE, Lee YR, Pan L, Kaelin WG, Jr., Yuan J, Wei W. Prolonged hypoxia alleviates prolyl hydroxylation-mediated suppression of RIPK1 to promote necroptosis and inflammation. Nat Cell Biol 25: 950-962, 2023.
13. Zhao X, Zeng W, Xu H, Sun Z, Hu Y, Peng B, McBride JD, Duan J, Deng J, Zhang B, Kim SJ, Zoll B, Saito T, Sasaguri H, Saido TC, Ballatore C, Yao H, Wang Z, Trojanowski JQ, Brunden KR, Lee VM, He Z. A microtubule stabilizer ameliorates protein pathogenesis and neurodegeneration in mouse models of repetitive traumatic brain injury. Sci Transl Med 15: eabo6889, 2023.
14. Zhang H, Gu J, Zhang Y, Guo H, Zhang S, Song J, Liu C, Wang L, Li D, Dai B. Graphene Quantum Dots Modulate Stress Granule Assembly and Prevent Abnormal Phase Transition of Fused in Sarcoma Protein. ACS Nano 17: 10129-10141, 2023.
15. Zhou L, Yang F, Bai Z, Zhou X, Zhang Z, Li Z, Gong J, Yu J, Pan L, Cao C, Chou JJ. Self-Assembled L-DNA Linkers for Rapid Construction of Multi-Specific Antibody-Drug Conjugates Library. Angew Chem Int Ed Engl e202302805, 2023.
16. Lou R, Cao Y, Li S, Lang X, Li Y, Zhang Y, Shui W. Benchmarking commonly used software suites and analysis workflows for DIA proteomics and phosphoproteomics. Nat Commun 14: 94, 2023.
17. Luo M, Yin Y, Zhou Z, Zhang H, Chen X, Wang H, Zhu ZJ. A mass spectrum-oriented computational method for ion mobility-resolved untargeted metabolomics. Nat Commun 14: 1813, 2023.
18. Zhang T, Zhang N, Xing J, Zhang S, Chen Y, Xu D, Gu J. UDP-glucuronate metabolism controls RIPK1-driven liver damage in nonalcoholic steatohepatitis. Nat Commun 14: 2715, 2023.
19. Yuan L, Han Y, Zhao J, Zhang Y, Sun Y. Recognition and cleavage mechanism of intron-containing pre-tRNA by human TSEN endonuclease complex. Nat Commun 14: 6071, 2023.
20. Li D, Ma Y, Xia W, Tao Y, Zhang Y, Zhang H, Li D, Dai B, Liu C. Creating an Amyloid 'Kaleidoscope' Using Short Iodinated Peptides. Angew Chem Int Ed Engl 62: e202310737, 2023.
21. Hou X, Zhang X, Zou H, Guan M, Fu C, Wang W, Zhang ZR, Geng Y, Chen Y. Differential and substrate-specific inhibition of gamma-secretase by the C-terminal region of ApoE2, ApoE3, and ApoE4. Neuron 2023.
22. He H, Yang W, Su N, Zhang C, Dai J, Han F, Singhal M, Bai W, Zhu X, Zhu J, Liu Z, Xia W, Liu X, Zhang C, Jiang K, Huang W, Chen D, Wang Z, He X, Kirchhoff F, Li Z, Liu C, Huan J, Wang X, Wei W, Wang J, Augustin HG, Hu J. Activating NO-sGC crosstalk in the mouse vascular niche promotes vascular integrity and mitigates acute lung injury. J Exp Med 220: 2023.
23. Zhang S, Li J, Xu Q, Xia W, Tao Y, Shi C, Li D, Xiang S, Liu C. Conformational Dynamics of an alpha-Synuclein Fibril upon Receptor Binding Revealed by Insensitive Nuclei Enhanced by Polarization Transfer-Based Solid-State Nuclear Magnetic Resonance and Cryo-Electron Microscopy. J Am Chem Soc 145: 4473-4484, 2023
24. Qianhui Xu, Yeyang Ma, Yunpeng Sun, Dan Li, Xin Zhang, Cong Liu.Protein amyloid aggregate Structure and function. Aggregate.2023
25. Niu K, Zhang J, Ge S, Li D, Sun K, You Y, Qiu J, Wang K, Wang X, Liu R, Liu Y, Li B, Zhu ZJ, Qu L, Jiang H, Liu N. ONE-seq: epitranscriptome and gene-specific profiling of NAD-capped RNA. Nucleic Acids Res 51: e12, 2023.
26. Tao Y, Xia W, Zhao Q, Xiang H, Han C, Zhang S, Gu W, Tang W, Li Y, Tan L, Li D, Liu C. Structural mechanism for specific binding of chemical compounds to amyloid fibrils. Nat Chem Biol 19: 1235-1245, 2023.
27. Qin Y, Li D, Qi C, Xiang H, Meng H, Liu J, Zhou S, Gong X, Li Y, Xu G, Zu R, Xie H, Xu Y, Xu G, Zhang Z, Chen S, Pan L, Li Y, Tan L. Structure-based development of potent and selective type-II kinase inhibitors of RIPK1. Acta Pharm Sin B 14: 319-334, 2024.
28. Wang JY, Ma GM, Tang XQ, Shi QL, Yu MC, Lou MM, He KW, Wang WY. Brain region-specific synaptic function of FUS underlies the FTLD-linked behavioural disinhibition. Brain 146: 2107-2119, 2023.
29. Cai Y., Zhou Z., Zhu ZJ. Advanced analytical and informatic strategies for metabolite annotation in untargeted metabolomics. Trac-Trend Anal Chem.2023.
30. Shen P, Ye K, Xiang H, Zhang Z, He Q, Zhang X, Cai MC, Chen J, Sun Y, Lin L, Qi C, Zhang M, Cheung LWT, Shi T, Yin X, Li Y, Di W, Zang R, Tan L, Zhuang G. Therapeutic targeting of CPSF3-dependent transcriptional termination in ovarian cancer. Sci Adv 9: eadj0123, 2023.
31. Tian S, Zhan D, Yu Y, Wang Y, Liu M, Tan S, Li Y, Song L, Qin Z, Li X, Liu Y, Li Y, Ji S, Wang S, Proteomic Massive A, Quality Control C, Zheng Y, He F, Qin J, Ding C. Quartet protein reference materials and datasets for multi-platform assessment of label-free proteomics. Genome Biol 24: 202, 2023.
32. Zong FJ, Min X, Zhang Y, Li YK, Zhang XT, Liu Y, He KW. Circadian time- and sleep-dependent modulation of cortical parvalbumin-positive inhibitory neurons. EMBO J 42: e111304, 2023.
33. Li Y, Zou C, Chen C, Li S, Zhu Z, Fan Q, Pang R, Li F, Chen Z, Wang Z, Yu W, Yuan J, Li P. Myeloid-derived MIF drives RIPK1-mediated cerebromicrovascular endothelial cell death to exacerbate ischemic brain injury. Proc Natl Acad Sci U S A 120: e2219091120, 2023.
34. Ni J, Ren Y, Su T, Zhou J, Fu C, Lu Y, Li D, Zhao J, Li Y, Zhang Y, Fang Y, Liu N, Geng Y, Chen Y. Loss of TDP-43 function underlies hippocampal and cortical synaptic deficits in TDP-43 proteinopathies. Mol Psychiatry 28: 931-945, 2023.
35. Chen X, Yang Q, Kong W, Ge Y, He J, Yan A, Li D. High spatial-resolved heat manipulating membrane heterogeneity alters cellular migration and signaling. Proc Natl Acad Sci U S A 120: e2312603120, 2023.
36. Yang Z, Wang Y, Wei M, Li S, Jia C, Cheng C, Al-Nusaif M, Zhang J, Liu C, Le W. Intrastriatal injection of Parkinson's disease intestine and vagus lysates initiates alpha-synucleinopathy in rat brain. Cell Death Dis 14: 4, 2023.
37. Lyu H, Sun L, Guan Z, Li J, Yin C, Zhang Y, Jiang H. Proximity labeling reveals OTUD3 as a DNA-binding deubiquitinase of cGAS. Cell Rep 42: 112309, 2023.
38. Zhao X, Zhang Z, Zhu Q, Luo Y, Ye Q, Shi S, He X, Zhu J, Zhang D, Xia W, Zhang Y, Jiang L, Cui L, Ye Y, Xiang Y, Hu J, Zhang J, Lin CP. Modeling human ectopic pregnancies with trophoblast and vascular organoids. Cell Rep 42: 112546, 2023.
39. Wang F, Xia W, Zhang M, Wu R, Song X, Hao Y, Feng Y, Zhang L, Li D, Kang W, Liu C, Liu L. Engineering of antimicrobial peptide fibrils with feedback degradation of bacterial-secreted enzymes. Chem Sci 14: 10914-10924, 2023.
40. Wang H, Yin Y and Zhu ZJ. Encoding LC-MS-Based Untargeted Metabolomics Data into Images toward AI-Based Clinical Diagnosis. Anal Chem 2023.
41. Wang J, Zhou S, Cheng Y, Cheng L, Qin Y, Zhang Z, Bi A, Xiang H, He X, Tian X, Liu W, Zhang J, Peng C, Zhu Z, Huang M, Li Y, Zhuang G, Tan L. Selective Covalent Targeting of Pyruvate Kinase M2 Using Arsenous Warheads. J Med Chem 66: 2608-2621, 2023.
42. Yue W, Deng X, Wang Z, Jiang M, Hu R, Duan Y, Wang Q, Cui J, Fang Y. Inhibition of the MEK/ERK pathway suppresses immune overactivation and mitigates TDP-43 toxicity in a Drosophila model of ALS. Immun Ageing 20: 27, 2023.
43. Shu S, Jiang M, Deng X, Yue W, Cao X, Zhang K, Wang Z, He H, Cui J, Wang Q, Qu K, Fang Y. Heterochromatic silencing of immune-related genes in glia is required for BBB integrity and normal lifespan in drosophila. Aging Cell 22: e13947, 2023.
44. Li X, Pinou L, Du Y, Chen X, Liu C. Emerging roles of O-glycosylation in regulating protein aggregation, phase separation, and functions. Curr Opin Chem Biol 75: 102314, 2023.
45. Liu C and Zhang X. Navigating the terrain of protein aggregation and phase separation - A chemical biology perspective. Curr Opin Chem Biol 77: 102386, 2023.
46. Zhang H, Luo M, Wang H, Ren F, Yin Y, Zhu ZJ. AllCCS2: Curation of Ion Mobility Collision Cross-Section Atlas for Small Molecules Using Comprehensive Molecular Representations. Anal Chem 95: 13913-13921, 2023.
47. Li W and Yuan J. Targeting RIPK1 kinase for modulating inflammation in human diseases. Front Immunol 14: 1159743, 2023.
48. Min X, Wang JY, Zong FJ, Zhao J, Liu N, He KW. miR-34a regulates silent synapse and synaptic plasticity in mature hippocampus. Prog Neurobiol 222: 102404, 2023.
49. Yang B, Zhang W, Sun L, Lu B, Yin C, Zhang Y, Jiang H. Creatine kinase brain-type regulates BCAR1 phosphorylation to facilitate DNA damage repair. iScience 26: 106684, 2023.
50. Ge S, Wang X, Wang Y, Dong M, Li D, Niu K, Wang T, Liu R, Zhao C, Liu N, Zhong M. Hidden features of NAD-RNA epitranscriptome in Drosophila life cycle. iScience 27: 108618, 2024.
51. Li D, Ge S, Liu Y, Pan M, Wang X, Han G, Zou S, Liu R, Niu K, Zhao C, Liu N, Qu L. Epitranscriptome analysis of NAD-capped RNA by spike-in-based normalization and prediction of chronological age. iScience 26: 108558, 2023.
52. Zhao Q, Tao Y, Zhao K, Ma Y, Xu Q, Liu C, Zhang S, Li D. Structural Insights of Fe(3+) Induced alpha-synuclein Fibrillation in Parkinson's Disease. J Mol Biol 435: 167680, 2023.
53. Yue W, Tang CW and Fang Y. PIKFYVE Inhibition, A Neuronal "Emetic" for Treating ALS? Neurosci Bull 39: 1738-1740, 2023.
54. Li D and Liu C. Molecular rules governing the structural polymorphism of amyloid fibrils in neurodegenerative diseases. Structure 31: 1335-1347, 2023.
55. Wang Y, Ling X, Zhang C, Zou J, Luo B, Luo Y, Jia X, Jia G, Zhang M, Hu J, Liu T, Wang Y, Lu K, Li D, Ma J, Liu C, Su Z. Modular characterization of SARS-CoV-2 nucleocapsid protein domain functions in nucleocapsid-like assembly. Mol Biomed 4: 16, 2023.
56. Fan Y, Sun Y, Yu W, Tao Y, Xia W, Liu Y, Zhao Q, Tang Y, Sun Y, Liu F, Cao Q, Wu J, Liu C, Wang J, Li D. Conformational change of alpha-synuclein fibrils in cerebrospinal fluid from different clinical phases of Parkinson's disease. Structure 31: 78-87 e75, 2023.
57. Xia A, Wang X, He J, Wu W, Jiang W, Xue S, Zhang Q, Gao Y, Han Y, Li Y, Peng X, Xie M, Mayer CT, Liu J, Hua C, Sha Y, Xu W, Huang J, Ying T, Jiang S, Xie Y, Cai Q, Lu L, Silva IT, Yuan Z, Zhang Y, Wang Q. Cross-reactive antibody response to Monkeypox virus surface proteins in a small proportion of individuals with and without Chinese smallpox vaccination history. BMC Biol 21: 205, 2023.
58. Wang F, Jin T, Li H, Long H, Liu Y, Jin S, Lu Y, Peng Y, Liu C, Zhao L, Wang X. Cannabidivarin alleviates alpha-synuclein aggregation via DAF-16 in Caenorhabditis elegans. FASEB J 37: e22735, 2023.
59. Han Y and He Z. Concomitant protein pathogenesis in Parkinson's disease and perspective mechanisms. Front Aging Neurosci 15: 1189809, 2023.
60. Hu X, Zou R, Zhang Z, Ji J, Li J, Huo XY, Liu D, Ge MX, Cui MK, Wu MZ, Li ZP, Wang Q, Zhang X, Zhang ZR. UBE4A catalyzes NRF1 ubiquitination and facilitates DDI2-mediated NRF1 cleavage. Biochim Biophys Acta Gene Regul Mech 1866: 194937, 2023.
61. Li J, Cao Y, Yang Y, Ma H, Zhao J, Zhang Y, Liu N. Quantitative Acetylomics Reveals Substrates of Lysine Acetyltransferase GCN5 in Adult and Aging Drosophila. J Proteome Res 22: 2909-2924, 2023.
62. Liu C, The riverdance of proteins within the cell: a special issue on protein phase separation in biology and diseases. Acta Biochim Biophys Sin,2023.
63. Chen Z. Using Micropatterned Supported Lipid Bilayers to Probe the Mechanosensitivity of Signaling Receptors. Methods Mol Biol 2600: 283-289, 2023.